PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676758160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 473aa    MW: 52146.3 Da    PI: 5.7526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676758160genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045127149123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+Cg +F++ ++   H  ++
  676758160 127 FECPICGNPFKSEEEVSEHVESC 149
                89*************99998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.517127161IPR007087Zinc finger, C2H2
SuperFamilySSF1435031.44E-18187269IPR018997PUB domain
CDDcd092127.13E-22190273No hitNo description
PfamPF094099.3E-18190263IPR018997PUB domain
SMARTSM005802.6E-24191258IPR018997PUB domain
SuperFamilySSF542369.82E-12339448IPR029071Ubiquitin-related domain
PROSITE profilePS5003310.052364448IPR001012UBX domain
Gene3DG3DSA:3.10.20.904.1E-7364447No hitNo description
PfamPF007898.4E-5366415IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSAPV NPIQNRFNPP QPSKPNPNPT  60
PRPTKPSPSP SSGSSSAPLP EKIPSSGSTK NPDPVPVRAP PQDGFDPYGA LITSSNRSQN  120
GYTLDMFECP ICGNPFKSEE EVSEHVESCL GDTTTNGGDK SASEKMDTDV EDKSEVEKLV  180
VVYLSGKPTE SSVDVLLRLF KNIVKEPENG KFRKIRMSNA KIKEAIGDVP GGVELLELVG  240
FVLKEENDEV WAVMEVPRDE QTQLINKVVG ILENSKTETP AKDDISGSSV AEEPVVPKKI  300
DREIRVFFSV AENVASRIEV PDSFYSLSAD EIKREADLRR KKIAESQLLI PRSYREKQAK  360
AARRRYKRSM IRVQFPDGVV LQGVFAPWEP TIALYEFVSS ALKEASLQFE LLDPVLVKRR  420
VIPHTPAPGQ KPRTLEDEEL VPSALIKFRP IETDSLVFTG LRNELLEISE PMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361369ARRRYKRSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291059.10.0hypothetical protein CARUB_v10017174mg
RefseqXP_013707193.10.0PREDICTED: plant UBX domain-containing protein 2-like
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLR0FNB30.0R0FNB3_9BRAS; Uncharacterized protein
STRINGAT2G01650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98351618